Package vcftools

VCF file manipulation tools

https://vcftools.github.io/

A program package designed for working with VCF files, such as those
generated by the 1000 Genomes Project. The aim of VCFtools is to
provide methods for working with VCF files: validating, merging,
comparing and calculate some basic population genetic statistics.

General Commands
Command Description
vcftools Utilities for the variant call format (VCF) and binary variant call format (BCF)