Package staden-io_lib
General purpose library to handle gene sequencing machine trace files
The Staden I/O library provides a general purpose interface for reading and
writing trace files and other bioinformatics experiment files. The programmer
simply calls, for example, the read_reading function to create a "Read" C
structure with the data loaded into memory. It has been compiled and tested
on a variety of Unix systems, MacOS X and MS Windows.
Version: 1.14.8
See also: staden-io_lib-devel.
General Commands | |
| scramble | Converts between the SAM, BAM and CRAM file formats. |
| srf2fasta | Converts SRF files to fasta format |
| srf2fastq | Converts SRF files to Sanger fastq format |
| srf_index_hash | Adds a hash-table index to an SRF file. |
| srf_info | Lists information about the contents of an SRF file |
| srf_list | Lists and/or counts the contents of an SRF file |