Package samtools

Tools for nucleotide sequence alignments in the SAM format

http://samtools.sourceforge.net/

SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

General Commands
Command Description
samtools Utilities for the Sequence Alignment/Map (SAM) format