Your company here — click to reach over 10,000 unique daily visitors

Package htslib

C library for high-throughput sequencing data formats


HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data,
and is the core library used by samtools and bcftools.

Version: 1.15.1

See also: htslib-tools.

File Formats

faidx an index enabling random access to FASTA and FASTQ files
sam Sequence Alignment/Map file format
vcf Variant Call Format


htslib-s3-plugin htslib AWS S3 plugin