Easel collection of small tools
Collection of additional small tools ("miniapps") from the Easel library.
Version: 3.3.2
See also: hmmer.
General Commands | |
| esl-afetch | retrieve alignments from a multi-MSA database |
| esl-alimanip | manipulate a multiple sequence alignment |
| esl-alimap | map two alignments to each other |
| esl-alimask | remove columns from a multiple sequence alignment |
| esl-alimerge | merge alignments based on their reference (RF) annotation |
| esl-alipid | calculate pairwise percent identities for all sequence pairs in an MSA |
| esl-alirev | reverse complement a multiple alignment |
| esl-alistat | summarize a multiple sequence alignment file |
| esl-compalign | compare two multiple sequence alignments |
| esl-compstruct | calculate accuracy of RNA secondary structure predictions |
| esl-construct | describe or create a consensus secondary structure |
| esl-histplot | collate data histogram, output xmgrace datafile |
| esl-mask | mask sequence residues with X's (or other characters) |
| esl-mixdchlet | fitting mixture Dirichlets to count data |
| esl-reformat | convert sequence file formats |
| esl-selectn | select random subset of lines from file |
| esl-seqrange | determine a range of sequences for one of many parallel processes |
| esl-seqstat | summarize contents of a sequence file |
| esl-sfetch | retrieve (sub-)sequences from a sequence file |
| esl-shuffle | shuffling sequences or generating random ones |
| esl-ssdraw | create postscript secondary structure diagrams |
| esl-translate | translate DNA sequence in six frames into individual ORFs |
| esl-weight | calculate sequence weights in MSA(s) |