tff_convert_dsi_studio - Man Page
manual page for usage: tff_convert_dsi_studio [-h] [--remove_invalid | --keep_invalid] [-f]
Description
usage: tff_convert_dsi_studio [-h] [--remove_invalid | --keep_invalid] [-f]
IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM
This script is made to fix DSI-Studio TRK file (unknown space/convention) to make it compatible with TrackVis, MI-Brain, Dipy Horizon (Stateful Tractogram).
The script either make it match with an anatomy from DSI-Studio.
This script was tested on various datasets and worked on all of them. However, always verify the results and if a specific case does not work. Open an issue on the Scilpy GitHub repository.
WARNING: This script is still experimental, DSI-Studio evolves quickly and results may vary depending on the data itself as well as DSI-studio version.
positional arguments
- IN_DSI_TRACTOGRAM
Path of the input tractogram file from DSI studio (.trk).
- IN_DSI_FA
Path of the input FA from DSI Studio (.nii.gz).
- OUT_TRACTOGRAM
Path of the output tractogram file.
options
- -h, --help
show this help message and exit
- --remove_invalid
Remove the streamlines landing out of the bounding box.
- --keep_invalid
Keep the streamlines landing out of the bounding box.
- -f
Force overwriting of the output files.
IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM
tff_convert_dsi_studio: error: the following arguments are required: IN_DSI_TRACTOGRAM, IN_DSI_FA, OUT_TRACTOGRAM