srf2fasta man page

srf2fasta — Converts SRF files to fasta format

Synopsis

srf2fasta [-C] srf_archive

Description

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

Options

-C
Masks out sequences tagged as bad quality.

Examples

To extract only the good quality sequences from runX.srf into runX.fasta.

srf2fasta -C runX.srf > runX.fasta

Author

James Bonfield, Wellcome Trust Sanger Institute

Info

September 19 Staden io_lib