physio2tsv - Man Page

physio2tsv [-h] physiofile tsvfile

Reads and writes active (i.e. non-zero) signals from SIEMENS advanced physiological log/DICOM files

This function expects to find either a combination of individual logfiles (*_ECG.log, *_RESP.log, *_PULS.log, *_EXT.log, *_Info.log) generated by >=R013 sequences, or a single encoded "_PHYSIO" DICOM file generated by >=R015 sequences.

physiofile

Either the fullpath of the DICOM file or the base name of the PHYSIO logfiles (fullpath without suffix and file extension, e.g. 'foo/bar/Physio_DATE_TIME_UUID'

tsvfile

The fullpath of the BIDS filenames, e.g. 'foo/bids/sub-001/func/sub-001_physio'

examples:
 physio2tsv myproject/sub-001/MR000000.dcm myproject/bids/sub-001/func/sub-001_physio
 physio2tsv myproject/sub-001/Physio_20200428 myproject/bids/sub-001/func/sub-001_physio

@author: Marcel Zwiers

Marcel Zwiers <m.zwiers@donders.ru.nl>