nipy_diagnose - Man Page

nipy_diagnose [-h] [--out-path OUT_PATH] [--out-fname-label OUT_FNAME_LABEL] [--ncomponents NCOMPONENTS] [--time-axis TIME_AXIS] [--slice-axis SLICE_AXIS] filename

nipy_diagnose(1) will generate a series of diagnostic images for a 4D fMRI image volume. The following images will be generated. <ext> is the input filename extension (e.g. ‘.nii’):

• components_<label>.png : plots of PCA basis vectors
• max_<label><ext> : max image
• mean_<label><ext> : mean image
• min_<label><ext> : min image
• pca_<label><ext> : 4D image of PCA component images
• pcnt_var_<label>.png : percent variance scree plot for PCA components
• std_<label><ext> : standard deviation image
• tsdiff_<label>.png : time series diagnostic plot

The filenames for the outputs are of the form <out-path>/<some_prefix><label><file-ext> where <out-path> is the path specified by the --out-path option, or the path of the input filename; <some_prefix> are the standard prefixes above, <label> is given by --out-label, or by the filename of the input image (with path and extension removed), and <file-ext> is ‘.png’ for graphics, or the extension of the input filename for volume images. For example, specifying only the input filename /some/path/fname.img will generate filenames of the form /some/path/components_fname.png, /some/path/max_fname.img etc.

nipy_3dto4d(1), nipy_4d_realign(1), nipy_4dto3d(1), nipy_tsdiffana(1)

nipy_3dto4d(1), nipy_4d_realign(1), nipy_4dto3d(1), nipy_tsdiffana(1).