gmx-wheel man page

gmx-wheel — Plot helical wheels

Synopsis

gmx wheel [-f [<.dat>]] [-o [<.eps>]] [-r0 <int>] [-rot0 <real>]
          [-T <string>] [-[no]nn]

Description

gmx wheel plots a helical wheel representation of your sequence. The input sequence is in the .dat file where the first line contains the number of residues and each consecutive line contains a residue name.

Options

Options to specify input files:

-f [<.dat>] (nnnice.dat)
Generic data file

Options to specify output files:

-o [<.eps>] (plot.eps)
Encapsulated PostScript (tm) file

Other options:

-r0 <int> (1)
The first residue number in the sequence
-rot0 <real> (0)
Rotate around an angle initially (90 degrees makes sense)
-T <string>
Plot a title in the center of the wheel (must be shorter than 10 characters, or it will overwrite the wheel)
-[no]nn (yes)
Toggle numbers

See Also

gmx(1)

More information about GROMACS is available at <http://www.gromacs.org/>.

Referenced By

gmx(1).

Oct 28, 2016 2016.1 GROMACS