csg_sphericalorder - Man Page

Part of the VOTCA package


csg_sphericalorder [Options]

csg_sphericalorder [--help]


!! EXPERIMENTAL !! Calculate spherical order parameter.
Needs non-spherical beads in mapping.


Allowed options:

 -h [ --help ]             display this help and exit
 --verbose                 be loud and noisy
 --verbose1                be very loud and noisy
 -v [ --verbose2 ]         be extremly loud and noisy
 --top arg                 atomistic topology file
 --filter arg (=*)       filter molecule names
 --radialcut arg (=0)    radial cutoff: distance from center where bead is
 --minrad arg (=0)       minimal distance a parcle has to be apart from center
                         to be considerd
 --refmol arg            Reference molecule
 --rbinw arg (=0)        Do multiple r_bins multiple histograms
Mapping options:
 --cg arg                  coarse graining mapping and bond definitions
 --map-ignore arg          list of molecules to ignore separated by ;
 --no-map                  disable mapping and act on original trajectory
Trajectory options:
 --trj arg                 atomistic trajectory file

--begin arg (=0)          skip frames before this time (only works for
                         Gromacs files)
 --first-frame arg (=0)    start with this frame
 --nframes arg             process the given number of frames


Written and maintained by the VOTCA Development Team <devs@votca.org>


csg_sphericalorder User Manual VOTCA Development Team