bowtie2-inspect - Man Page

manual page for bowtie2-inspect 2.4.1

Synopsis

bowtie2-inspect [options]* <bt2_base>

Description

Bowtie 2 version 2.4.1 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)

<bt2_base>

bt2 filename minus trailing .1.bt2/.2.bt2

By default, prints FASTA records of the indexed nucleotide sequences to standard out.  With -n, just prints names.  With -s, just prints a summary of the index parameters and sequences.

Options

--large-index

force inspection of the 'large' index, even if a 'small' one is present.

--debug

use the debug binary; slower, assertions enabled

--sanitized

use sanitized binary; slower, uses ASan and/or UBSan

--verbose

log the issued command

-a/--across <int>

Number of characters across in FASTA output (default: 60)

-n/--names

Print reference sequence names only

-s/--summary

Print summary incl. ref names, lengths, index properties

-v/--verbose

Verbose output (for debugging)

-h/--help

print detailed description of tool and its options

Info

January 2021 bowtie2-inspect 2.4.1