bidsparticipants - Man Page

bidsparticipants [-h] [-d] [-b NAME] sourcefolder bidsfolder

(Re)scans data sets in the source folder for subject metadata to populate the participants.tsv file in the bids directory, e.g. after you renamed (be careful there!), added or deleted data in the bids folder yourself.

Provenance information, warnings and error messages are stored in the bidsfolder/code/bidscoin/bidsparticipants.log file.

sourcefolder

The study root folder containing the raw source data folders

bidsfolder

The destination/output folder with the bids data

-d,  --dryrun

Do not save anything, only print the participants info on screen

-b NAME, --bidsmap NAME

The study bidsmap file with the mapping heuristics. If the bidsmap filename is just the base name (i.e. no "/" in the name) then it is assumed to be located in the current directory or in bidsfolder/code/bidscoin. Default: bidsmap.yaml

examples:
 bidsparticipants myproject/raw myproject/bids
 bidsparticipants myproject/raw myproject/bids -b mybidsmap

Marcel Zwiers <m.zwiers@donders.ru.nl>